The 2.0 version of rSNPBase

Variant report

Variant rs16997644
Chromosome Location chr20:16442135-16442136
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16392200-16453000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr20:16409200-16443600 Weak transcription Gastric stomach
3 chr20:16410200-16455800 Weak transcription Duodenum Mucosa Duodenum
4 chr20:16410200-16473200 Weak transcription Primary T helper cells PMA-I stimulated --
5 chr20:16410600-16455400 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr20:16411200-16455200 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr20:16414800-16443600 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr20:16420400-16453000 Weak transcription Left Ventricle heart
9 chr20:16420800-16471400 Weak transcription Primary hematopoietic stem cells blood
10 chr20:16425800-16443400 Weak transcription Ovary ovary
11 chr20:16429000-16443400 Weak transcription Psoas Muscle Psoas
12 chr20:16431400-16443400 Weak transcription Pancreas Pancrea
13 chr20:16431400-16454600 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr20:16431400-16455400 Weak transcription Fetal Lung lung
15 chr20:16431400-16456000 Weak transcription Liver Liver
16 chr20:16431400-16463000 Weak transcription Aorta Aorta
17 chr20:16431400-16508200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr20:16431600-16450800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr20:16431800-16458400 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr20:16431800-16462200 Weak transcription Primary T cells from cord blood blood
21 chr20:16433000-16456400 Weak transcription Primary B cells from cord blood blood
22 chr20:16436600-16443600 Weak transcription Fetal Intestine Small intestine
23 chr20:16436600-16445200 Weak transcription Fetal Intestine Large intestine
24 chr20:16436600-16464800 Weak transcription Small Intestine intestine
25 chr20:16437600-16453000 Weak transcription Esophagus oesophagus
26 chr20:16440000-16455000 Weak transcription HSMM muscle
27 chr20:16440400-16443400 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr20:16440400-16443400 Weak transcription Brain Anterior Caudate brain
29 chr20:16440400-16452800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr20:16440400-16454800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
31 chr20:16440400-16454800 Weak transcription Adipose Nuclei Adipose
32 chr20:16440400-16455400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
33 chr20:16440400-16468800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr20:16440600-16445400 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr20:16440600-16452600 Weak transcription NHEK skin
36 chr20:16440600-16452800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr20:16440600-16452800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr20:16440600-16454600 Weak transcription Skeletal Muscle Female skeletal muscle
39 chr20:16440600-16454800 Weak transcription Brain Hippocampus Middle brain
40 chr20:16440800-16454400 Weak transcription Colon Smooth Muscle Colon
41 chr20:16440800-16455400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr20:16440800-16456000 Weak transcription Rectal Smooth Muscle rectum
43 chr20:16441200-16452600 Weak transcription Stomach Mucosa stomach
44 chr20:16441200-16454600 Weak transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015