Variant report

Variant	rs16998554
Chromosome Location	chr4:143352109-143352110
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1489577	0.82[ASW][hapmap];0.89[LWK][hapmap];0.95[YRI][hapmap]
rs16998552	1.00[MEX][hapmap];0.85[MKK][hapmap]
rs17016045	1.00[AMR][1000 genomes]
rs17016109	0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6854312	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv830100	chr4:143216951-143393305	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143338600-143366600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143339000-143355400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:143346400-143353800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:143349000-143354400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:143349000-143354600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:143350000-143352400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:143350000-143355400	Weak transcription	Fetal Heart	heart
8	chr4:143350000-143356200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:143350000-143356200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:143350200-143356000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:143351200-143354800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr4:143351200-143364800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:143351200-143371200	Weak transcription	Pancreas	Pancrea
14	chr4:143351600-143352200	Weak transcription	Left Ventricle	heart
15	chr4:143351600-143356200	Weak transcription	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links