Variant report

Variant	rs16998845
Chromosome Location	chr21:17878075-17878076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2823852	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
2	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17841000-17881800	Weak transcription	Hela-S3	cervix
2	chr21:17866800-17878200	Weak transcription	Ovary	ovary
3	chr21:17873000-17883800	Weak transcription	Fetal Brain Female	brain
4	chr21:17873200-17886400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr21:17873200-17886400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr21:17877200-17879600	Enhancers	Brain Anterior Caudate	brain
7	chr21:17877400-17881600	Weak transcription	Osteobl	bone
8	chr21:17877600-17878600	Enhancers	Brain Germinal Matrix	brain
9	chr21:17877600-17879800	Enhancers	Brain Substantia Nigra	brain
10	chr21:17877600-17889600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr21:17877800-17879800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr21:17878000-17879600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr21:17878000-17879600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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