Variant report

Variant	rs17000620
Chromosome Location	chr4:76464991-76464992
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17000594	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap]
rs17000597	0.81[CHB][hapmap]
rs17000603	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs17000621	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs17214073	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs55708633	0.93[AFR][1000 genomes]
rs56806434	0.85[AFR][1000 genomes]
rs6847623	0.83[ASW][hapmap]
rs6856762	0.93[AFR][1000 genomes]
rs73827648	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76440400-76466400	Weak transcription	Small Intestine	intestine
2	chr4:76440400-76473200	Weak transcription	Gastric	stomach
3	chr4:76443400-76470200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:76444400-76471800	Weak transcription	Fetal Brain Male	brain
5	chr4:76451600-76474400	Weak transcription	Psoas Muscle	Psoas
6	chr4:76452600-76468000	Weak transcription	NHLF	lung
7	chr4:76452600-76477400	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:76453200-76473600	Weak transcription	Brain Angular Gyrus	brain
9	chr4:76455000-76469400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr4:76455000-76470200	Weak transcription	Brain Substantia Nigra	brain
11	chr4:76455000-76470800	Weak transcription	NHDF-Ad	bronchial
12	chr4:76456000-76473000	Weak transcription	HepG2	liver
13	chr4:76456400-76471600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:76456600-76467400	Weak transcription	HMEC	breast
15	chr4:76456600-76467400	Weak transcription	Osteobl	bone
16	chr4:76456600-76471000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr4:76456600-76473200	Weak transcription	Fetal Heart	heart
18	chr4:76456800-76467600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr4:76456800-76467800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:76456800-76470000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:76456800-76472400	Weak transcription	Brain Anterior Caudate	brain
22	chr4:76456800-76474400	Weak transcription	HSMMtube	muscle
23	chr4:76457000-76468400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr4:76457000-76470200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr4:76457000-76470800	Weak transcription	HSMM	muscle
26	chr4:76457000-76471800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr4:76457000-76474400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr4:76458000-76470200	Weak transcription	Right Ventricle	heart
29	chr4:76458200-76465000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr4:76458200-76467400	Weak transcription	Primary B cells from cord blood	blood
31	chr4:76458200-76468000	Weak transcription	Left Ventricle	heart
32	chr4:76458200-76470000	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr4:76458200-76470200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr4:76458200-76470200	Weak transcription	Aorta	Aorta
35	chr4:76458200-76470200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr4:76458200-76472000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr4:76458200-76472000	Weak transcription	Thymus	Thymus
38	chr4:76458200-76472600	Weak transcription	Pancreas	Pancrea
39	chr4:76458200-76474400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr4:76458400-76465800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr4:76458400-76467800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:76458400-76470000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr4:76458400-76470000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr4:76458400-76480800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr4:76458800-76465000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:76458800-76467200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr4:76458800-76468400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr4:76458800-76468800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr4:76458800-76469800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr4:76458800-76470000	Weak transcription	Brain Hippocampus Middle	brain

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