Variant report

Variant	rs17001477
Chromosome Location	chr21:15600210-15600211
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1475892	1.00[EUR][1000 genomes]
rs28579323	1.00[EUR][1000 genomes]
rs58041958	1.00[EUR][1000 genomes]
rs59704604	1.00[EUR][1000 genomes]
rs7275979	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7276511	1.00[ASN][1000 genomes]
rs7277455	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7278119	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7278665	1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7279926	1.00[EUR][1000 genomes]
rs7280206	1.00[ASN][1000 genomes]
rs7282081	1.00[EUR][1000 genomes]
rs8130525	1.00[EUR][1000 genomes]
rs9305297	1.00[EUR][1000 genomes]
rs9974277	1.00[EUR][1000 genomes]
rs9975031	1.00[EUR][1000 genomes]
rs9976092	1.00[EUR][1000 genomes]
rs9976969	1.00[EUR][1000 genomes]
rs9977174	1.00[EUR][1000 genomes]
rs9981182	1.00[EUR][1000 genomes]
rs9981787	1.00[EUR][1000 genomes]
rs9982477	1.00[EUR][1000 genomes]
rs9982684	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058202	chr21:14706767-15628668	Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	nsv869466	chr21:15482572-15683385	Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv913402	chr21:15545350-15606128	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1056588	chr21:15583231-15615520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1066738	chr21:15587815-15642948	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15589200-15600800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr21:15589600-15601200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr21:15589600-15601400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr21:15589800-15600400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr21:15589800-15600600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr21:15589800-15600800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr21:15589800-15601200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr21:15589800-15601200	Weak transcription	Fetal Brain Female	brain
9	chr21:15596200-15600600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr21:15596400-15600800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr21:15599200-15600600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr21:15599600-15600600	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links