Variant report

Variant	rs17002051
Chromosome Location	chrX:138307266-138307267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:24)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:24 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chrX:138307261-138307665	H1-hESC	embryonic stem cell:	n/a	n/a
2	RAD21	chrX:138307073-138307547	H1-hESC	embryonic stem cell:	n/a	n/a
3	MXI1	chrX:138307194-138307544	H1-hESC	embryonic stem cell:	n/a	n/a
4	YY1	chrX:138307219-138307550	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chrX:138307002-138307472	H1-hESC	embryonic stem cell:	n/a	n/a
6	USF1	chrX:138307017-138307344	H1-hESC	embryonic stem cell:	n/a	n/a
7	TCF12	chrX:138307166-138307578	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAX	chrX:138307021-138307584	H1-hESC	embryonic stem cell:	n/a	n/a
9	MAX	chrX:138307053-138307526	H1-hESC	embryonic stem cell:	n/a	n/a
10	SP1	chrX:138307117-138307509	H1-hESC	embryonic stem cell:	n/a	n/a
11	CTBP2	chrX:138307040-138307642	H1-hESC	embryonic stem cell:	n/a	n/a
12	ZNF143	chrX:138307142-138307610	H1-hESC	embryonic stem cell:	n/a	n/a
13	TCF12	chrX:138307179-138307466	H1-hESC	embryonic stem cell:	n/a	n/a
14	TEAD4	chrX:138307219-138307558	H1-hESC	embryonic stem cell:	n/a	n/a
15	SP1	chrX:138307052-138307517	H1-hESC	embryonic stem cell:	n/a	n/a
16	TAF1	chrX:138306985-138307288	H1-hESC	embryonic stem cell:	n/a	n/a
17	MAX	chrX:138306991-138307588	H1-hESC	embryonic stem cell:	n/a	n/a
18	SIN3A	chrX:138307070-138307618	H1-hESC	embryonic stem cell:	n/a	chrX:138307404-138307412
19	CHD2	chrX:138307056-138307463	H1-hESC	embryonic stem cell:	n/a	n/a
20	NANOG	chrX:138307003-138307457	H1-hESC	embryonic stem cell:	n/a	n/a
21	NANOG	chrX:138307104-138307461	H1-hESC	embryonic stem cell:	n/a	n/a
22	BCL11A	chrX:138307131-138307396	H1-hESC	embryonic stem cell:	n/a	n/a
23	TEAD4	chrX:138307091-138307608	H1-hESC	embryonic stem cell:	n/a	n/a
24	EP300	chrX:138307071-138307618	H1-hESC	embryonic stem cell:	n/a	chrX:138307291-138307305

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:138305410..138307857-chrX:138310310..138312252,2	MCF-7	breast:
2	chrX:138306244..138308578-chrX:138311859..138314047,2	K562	blood:

No data

Variant related genes	Relation type
FGF13	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17002052	1.00[YRI][hapmap]
rs7052681	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525867	chrX:137580983-138439843	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv533984	chrX:137938683-138556308	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv532935	chrX:138281469-138764448	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:138306600-138309000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chrX:138306800-138307600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chrX:138306800-138308200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chrX:138306800-138308200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chrX:138307000-138307400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
6	chrX:138307000-138307400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
7	chrX:138307000-138307400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chrX:138307000-138307400	Weak transcription	HSMMtube	muscle
9	chrX:138307000-138307400	Enhancers	K562	blood
10	chrX:138307000-138307600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chrX:138307000-138307600	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chrX:138307000-138307800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chrX:138307000-138307800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chrX:138307000-138307800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chrX:138307000-138307800	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chrX:138307200-138307400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chrX:138307200-138307400	Flanking Active TSS	Psoas Muscle	Psoas
18	chrX:138307200-138307600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chrX:138307200-138307800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
20	chrX:138307200-138307800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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