The 2.0 version of rSNPBase

Variant report

Variant rs17002797
Chromosome Location chr4:78643947-78643948
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:78621400-78645800 Weak transcription Stomach Smooth Muscle stomach
2 chr4:78626400-78644400 Weak transcription Placenta Placenta
3 chr4:78626400-78645200 Weak transcription Fetal Muscle Trunk muscle
4 chr4:78628400-78648400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
5 chr4:78629000-78649400 Weak transcription HMEC breast
6 chr4:78629200-78676600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr4:78629400-78649400 Weak transcription Spleen Spleen
8 chr4:78629400-78656200 Weak transcription Small Intestine intestine
9 chr4:78630200-78660000 Weak transcription Muscle Satellite Cultured Cells --
10 chr4:78631200-78656000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
11 chr4:78631600-78649400 Weak transcription Brain Hippocampus Middle brain
12 chr4:78631600-78652600 Weak transcription Esophagus oesophagus
13 chr4:78631800-78649400 Weak transcription Aorta Aorta
14 chr4:78632000-78651800 Weak transcription HepG2 liver
15 chr4:78632600-78697800 Weak transcription Colonic Mucosa Colon
16 chr4:78633600-78645200 Weak transcription Pancreas Pancrea
17 chr4:78634000-78647600 Weak transcription HSMM muscle
18 chr4:78635000-78646000 Weak transcription Fetal Lung lung
19 chr4:78635600-78652800 Strong transcription Primary B cells from peripheral blood blood
20 chr4:78636000-78651600 Weak transcription Fetal Heart heart
21 chr4:78636200-78646000 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr4:78636200-78647400 Weak transcription Fetal Kidney kidney
23 chr4:78636200-78649600 Weak transcription Colon Smooth Muscle Colon
24 chr4:78636400-78659000 Weak transcription Psoas Muscle Psoas
25 chr4:78636600-78645000 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr4:78636800-78649400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr4:78636800-78655400 Strong transcription Primary T cells fromperipheralblood blood
28 chr4:78637200-78647400 Weak transcription K562 blood
29 chr4:78637200-78649400 Weak transcription NHDF-Ad bronchial
30 chr4:78637400-78649400 Weak transcription Ovary ovary
31 chr4:78637400-78661200 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr4:78637400-78673200 Weak transcription Cortex derived primary cultured neurospheres brain
33 chr4:78637600-78649400 Weak transcription Brain Cingulate Gyrus brain
34 chr4:78638000-78644800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
35 chr4:78638800-78652200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr4:78638800-78655200 Strong transcription Primary T regulatory cells fromperipheralblood blood
37 chr4:78639200-78644200 Weak transcription Primary hematopoietic stem cells blood
38 chr4:78639200-78645400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr4:78639200-78645400 Weak transcription Left Ventricle heart
40 chr4:78639200-78649400 Weak transcription HUVEC blood vessel
41 chr4:78639200-78661200 Weak transcription Brain Inferior Temporal Lobe brain
42 chr4:78639400-78649400 Weak transcription Fetal Brain Female brain
43 chr4:78639400-78650400 Weak transcription ES-I3 Cell Line embryonic stem cell
44 chr4:78639400-78671200 Weak transcription Brain Germinal Matrix brain
45 chr4:78639600-78652800 Weak transcription NHEK skin
46 chr4:78639800-78649400 Weak transcription Right Ventricle heart
47 chr4:78640000-78649400 Weak transcription Brain Anterior Caudate brain
48 chr4:78640000-78653000 Weak transcription GM12878-XiMat blood
49 chr4:78640200-78652800 Strong transcription Primary monocytes fromperipheralblood blood
50 chr4:78640200-78652800 Strong transcription Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015