Variant report

Variant	rs17002937
Chromosome Location	chr4:79020997-79020998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10008346	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10009577	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10014790	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10020175	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10029277	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10032397	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10222691	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10222693	0.90[EUR][1000 genomes]
rs10440393	0.90[EUR][1000 genomes]
rs10518187	1.00[EUR][1000 genomes]
rs17002926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17002927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17002965	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17002971	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17002972	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17002978	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17453030	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28433896	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28437781	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28438642	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28624340	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627481	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28640590	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867009	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28673365	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28728167	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28794638	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28825502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56069998	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56209110	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56346346	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56404216	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860675	0.93[EUR][1000 genomes]
rs72860700	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307350	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv520625	chr4:79002655-79071788	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79014200-79026000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:79018200-79026200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:79018800-79026200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:79019200-79023800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:79019200-79025600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:79019200-79026200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:79019200-79026200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:79019200-79026600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:79019400-79025600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:79020000-79022000	Enhancers	Fetal Lung	lung
11	chr4:79020000-79022200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:79020200-79021200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:79020200-79022200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:79020200-79024000	Enhancers	Fetal Heart	heart
15	chr4:79020400-79022200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:79020600-79021000	Weak transcription	Fetal Stomach	stomach
17	chr4:79020600-79021800	Weak transcription	Fetal Muscle Leg	muscle
18	chr4:79020800-79021200	Weak transcription	Psoas Muscle	Psoas
19	chr4:79020800-79022000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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