Variant report

Variant	rs17003838
Chromosome Location	chr4:80449096-80449097
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1371992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17003762	1.00[EUR][1000 genomes]
rs17003765	1.00[EUR][1000 genomes]
rs17003867	1.00[EUR][1000 genomes]
rs58777020	1.00[EUR][1000 genomes]
rs73830510	1.00[EUR][1000 genomes]
rs7686359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7691273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999174	chr4:80212935-80512356	Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv879507	chr4:80365765-80552199	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879508	chr4:80398708-80552199	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv829980	chr4:80442108-80468775	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80448200-80453800	Weak transcription	Fetal Brain Male	brain
2	chr4:80448400-80449400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:80448600-80449200	Weak transcription	Fetal Brain Female	brain
4	chr4:80448800-80450000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr4:80449000-80449400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:80449000-80449600	Enhancers	Primary hematopoietic stem cells	blood
7	chr4:80449000-80450400	Enhancers	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links