Variant report

Variant	rs17004062
Chromosome Location	chr4:80606765-80606766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10002250	0.82[ASN][1000 genomes]
rs10026633	0.94[ASN][1000 genomes]
rs11730070	0.94[ASN][1000 genomes]
rs11730147	0.94[ASN][1000 genomes]
rs13121388	0.94[ASN][1000 genomes]
rs13139505	0.94[ASN][1000 genomes]
rs35764093	0.81[ASN][1000 genomes]
rs3979608	0.94[ASN][1000 genomes]
rs4351041	0.94[ASN][1000 genomes]
rs4428314	0.94[ASN][1000 genomes]
rs4557284	0.82[ASN][1000 genomes]
rs4591633	0.94[ASN][1000 genomes]
rs4975112	0.94[ASN][1000 genomes]
rs4975113	0.94[ASN][1000 genomes]
rs4975114	0.94[ASN][1000 genomes]
rs6814747	0.94[ASN][1000 genomes]
rs6838535	0.94[ASN][1000 genomes]
rs7437822	0.81[ASN][1000 genomes]
rs7654809	0.94[ASN][1000 genomes]
rs7667907	0.94[ASN][1000 genomes]
rs7669061	0.90[ASN][1000 genomes]
rs7686701	0.94[ASN][1000 genomes]
rs7700169	0.94[ASN][1000 genomes]
rs9647455	0.94[ASN][1000 genomes]
rs9995781	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002031	chr4:80459528-80759113	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1005152	chr4:80549659-80814456	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv997478	chr4:80578536-80669871	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1006225	chr4:80578536-80670045	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv521454	chr4:80598796-80654020	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv594737	chr4:80598796-80669947	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80605800-80608000	Enhancers	Dnd41	blood
2	chr4:80606000-80606800	Enhancers	Primary hematopoietic stem cells	blood
3	chr4:80606000-80607000	Enhancers	Primary T cells from cord blood	blood
4	chr4:80606200-80607000	Enhancers	Fetal Thymus	thymus
5	chr4:80606600-80606800	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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