Variant report

Variant	rs17005115
Chromosome Location	chr4:82276118-82276119
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1377058	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005104	1.00[AMR][1000 genomes]
rs17005112	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005113	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005125	1.00[AMR][1000 genomes]
rs56657760	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57035363	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58088577	1.00[AMR][1000 genomes]
rs6831142	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829985	chr4:82199328-82353656	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82273800-82276200	Enhancers	NHDF-Ad	bronchial
2	chr4:82274200-82280200	Weak transcription	NHLF	lung
3	chr4:82274400-82279200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:82275400-82277600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:82275400-82280200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:82275400-82280200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:82276000-82280000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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