Variant report

Variant	rs17006564
Chromosome Location	chr4:141789785-141789786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11942518	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs17006600	0.80[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7670948	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1845859	chr4:141786475-141816657	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141778200-141791600	Weak transcription	Brain Germinal Matrix	brain
2	chr4:141778400-141791600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:141778400-141792800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:141778400-141796000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:141778400-141797600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:141778600-141798000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:141780200-141792600	Weak transcription	Fetal Kidney	kidney
8	chr4:141780400-141791600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:141781800-141796400	Weak transcription	Fetal Brain Male	brain
10	chr4:141782600-141795000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:141783600-141791400	Weak transcription	Fetal Lung	lung
12	chr4:141783600-141791800	Weak transcription	Fetal Intestine Small	intestine
13	chr4:141784000-141796400	Weak transcription	Fetal Brain Female	brain
14	chr4:141784400-141791600	Weak transcription	Spleen	Spleen
15	chr4:141784800-141790600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr4:141787400-141795400	Weak transcription	Brain Angular Gyrus	brain
17	chr4:141787400-141796400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:141787800-141791200	Weak transcription	Fetal Intestine Large	intestine
19	chr4:141788000-141792800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:141788200-141791200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr4:141789000-141790600	Weak transcription	Right Ventricle	heart
22	chr4:141789000-141791200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:141789000-141791200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr4:141789000-141792600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr4:141789400-141791600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr4:141789400-141791600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr4:141789400-141791600	Weak transcription	Fetal Stomach	stomach
28	chr4:141789400-141791600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:141789400-141792600	Weak transcription	Adipose Nuclei	Adipose
30	chr4:141789400-141794000	Enhancers	Fetal Heart	heart
31	chr4:141789600-141791400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:141789600-141791600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr4:141789600-141791600	Weak transcription	Fetal Muscle Leg	muscle
34	chr4:141789600-141791600	Weak transcription	Left Ventricle	heart
35	chr4:141789600-141791600	Weak transcription	Ovary	ovary
36	chr4:141789600-141791800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr4:141789600-141795800	Weak transcription	Psoas Muscle	Psoas
38	chr4:141789600-141797200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr4:141789600-141797200	Weak transcription	Colon Smooth Muscle	Colon
40	chr4:141789600-141831600	Weak transcription	Aorta	Aorta

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