Variant report

Variant	rs17006935
Chromosome Location	chr4:124373206-124373207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12644620	1.00[EUR][1000 genomes]
rs12646555	1.00[EUR][1000 genomes]
rs17006948	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs57235450	1.00[EUR][1000 genomes]
rs59791195	1.00[EUR][1000 genomes]
rs60289595	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006945	chr4:124206328-124503863	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv537240	chr4:124206328-124503863	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv595379	chr4:124337522-124395024	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1014618	chr4:124350676-124391697	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124365400-124374000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:124365400-124374000	Weak transcription	Brain Germinal Matrix	brain
3	chr4:124365800-124373800	Weak transcription	Small Intestine	intestine
4	chr4:124365800-124376600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:124365800-124379200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:124366000-124373800	Weak transcription	Fetal Lung	lung
7	chr4:124367200-124375400	Enhancers	Primary B cells from peripheral blood	blood
8	chr4:124368200-124373800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:124369000-124373800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:124370400-124375600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:124371200-124373600	Weak transcription	HSMM	muscle
12	chr4:124371200-124373800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr4:124371200-124374000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:124371200-124374000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:124371400-124373600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:124371400-124373800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:124371400-124374000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:124371400-124374000	Weak transcription	HMEC	breast
19	chr4:124371600-124373800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr4:124371600-124373800	Weak transcription	NH-A	brain
21	chr4:124371600-124374000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:124371600-124374000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:124371600-124375000	Enhancers	Primary B cells from cord blood	blood
24	chr4:124371800-124373600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr4:124371800-124373600	Weak transcription	NHLF	lung
26	chr4:124371800-124373800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:124371800-124373800	Weak transcription	HSMMtube	muscle
28	chr4:124371800-124374000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr4:124371800-124374000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr4:124372200-124373600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:124372400-124373400	Enhancers	HUVEC	blood vessel
32	chr4:124373000-124374400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:124373000-124376400	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links