Variant report

Variant	rs17007024
Chromosome Location	chr4:124430794-124430795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12643847	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12644121	0.80[ASN][1000 genomes]
rs12644228	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12644620	0.80[ASN][1000 genomes]
rs12646555	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17007026	0.88[AFR][1000 genomes]
rs17007051	0.86[ASN][1000 genomes]
rs28827850	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs57111794	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs57235450	0.83[ASN][1000 genomes]
rs57904792	0.90[ASN][1000 genomes]
rs57940178	0.86[ASN][1000 genomes]
rs58280008	0.80[ASN][1000 genomes]
rs58535348	1.00[AMR][1000 genomes]
rs59621223	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59791195	0.80[ASN][1000 genomes]
rs60096196	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60289595	0.80[ASN][1000 genomes]
rs60795072	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6534417	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006945	chr4:124206328-124503863	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv537240	chr4:124206328-124503863	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124427600-124431000	Weak transcription	Placenta	Placenta
2	chr4:124427800-124431200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:124427800-124432000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:124428000-124471800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:124428200-124432200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:124428800-124436800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:124429000-124437200	Weak transcription	Fetal Kidney	kidney
8	chr4:124429200-124437800	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:124430000-124431200	Enhancers	HepG2	liver
10	chr4:124430200-124431000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:124430200-124432200	Enhancers	K562	blood
12	chr4:124430400-124430800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:124430400-124430800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:124430400-124431000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr4:124430400-124431600	Enhancers	Brain Germinal Matrix	brain
16	chr4:124430400-124432400	Enhancers	Adipose Nuclei	Adipose
17	chr4:124430400-124442600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:124430600-124431400	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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