Variant report

Variant	rs17007394
Chromosome Location	chr4:120819549-120819550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10032527	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17007348	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17007896	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1812991	0.82[ASN][1000 genomes]
rs1894953	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28406513	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28540629	0.83[AMR][1000 genomes]
rs28549859	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28885123	0.83[AMR][1000 genomes]
rs41390552	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4432732	0.82[ASN][1000 genomes]
rs57919240	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62319753	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62321763	0.92[ASN][1000 genomes]
rs6534160	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6827124	0.82[ASN][1000 genomes]
rs7684775	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9990741	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120818400-120819600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:120818400-120819800	Enhancers	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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