Variant report

Variant	rs17007466
Chromosome Location	chr4:84772839-84772840
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:84772338..84775245-chr4:84775376..84777045,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11939071	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007464	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007504	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007520	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840243	1.00[TSI][hapmap]
rs7655558	1.00[ASN][1000 genomes]
rs7680681	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv879513	chr4:84612373-84905452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84770400-84773000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:84771400-84774600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr4:84771600-84773800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:84771600-84774000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:84771600-84774600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:84771600-84774600	Enhancers	HSMMtube	muscle
7	chr4:84771800-84773000	Flanking Active TSS	HepG2	liver
8	chr4:84771800-84773400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr4:84771800-84773800	Flanking Active TSS	A549	lung
10	chr4:84771800-84774200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:84771800-84774400	Enhancers	NHLF	lung
12	chr4:84771800-84774600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:84771800-84774800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:84771800-84775000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr4:84771800-84775000	Enhancers	HSMM	muscle
16	chr4:84772000-84773000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:84772000-84773000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr4:84772000-84773600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:84772000-84773800	Flanking Active TSS	NH-A	brain
20	chr4:84772000-84775000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:84772000-84776000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr4:84772000-84777600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:84772200-84773200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:84772200-84773400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr4:84772200-84774200	Enhancers	Placenta Amnion	Placenta Amnion
26	chr4:84772200-84774200	Enhancers	HMEC	breast
27	chr4:84772400-84773400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr4:84772400-84773400	Enhancers	Hela-S3	cervix
29	chr4:84772400-84774400	Enhancers	NHDF-Ad	bronchial
30	chr4:84772600-84773000	Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr4:84772600-84773000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr4:84772600-84773000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr4:84772600-84773000	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr4:84772600-84773200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr4:84772600-84773200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr4:84772600-84774200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr4:84772800-84773000	Enhancers	Muscle Satellite Cultured Cells	--
38	chr4:84772800-84773000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr4:84772800-84773200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr4:84772800-84773200	Flanking Active TSS	Osteobl	bone
41	chr4:84772800-84773400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr4:84772800-84773400	Flanking Active TSS	NHEK	skin
43	chr4:84772800-84773600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr4:84772800-84773800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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