Variant report

Variant	rs17007543
Chromosome Location	chr4:84781424-84781425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10002748	0.91[ASN][1000 genomes]
rs10516707	0.91[ASN][1000 genomes]
rs17007545	1.00[ASN][1000 genomes]
rs17007639	0.91[ASN][1000 genomes]
rs6821270	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv879513	chr4:84612373-84905452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84776600-84785800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:84777000-84781600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:84777000-84781600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:84777000-84786600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:84778200-84783600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:84778400-84787800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:84778600-84787800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:84779400-84786400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:84779800-84786600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:84779800-84787800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr4:84779800-84787800	Weak transcription	NH-A	brain
12	chr4:84780000-84786600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:84781000-84781800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr4:84781200-84781800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr4:84781400-84781600	Enhancers	HSMM	muscle
16	chr4:84781400-84786800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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