Variant report

Variant	rs17007565
Chromosome Location	chr4:142634711-142634712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr4:142634268-142635693	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
IL15	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17007494	0.82[ASW][hapmap];0.84[MKK][hapmap]
rs17007564	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17007618	0.87[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17007621	1.00[ASW][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41309798	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6826882	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73851533	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3401979	chr4:142434442-142803321	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018949	chr4:142451823-142732365	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1030822	chr4:142487721-142706053	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv3448093	chr4:142612197-142704695	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142608800-142655000	Weak transcription	Gastric	stomach
2	chr4:142624000-142652000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr4:142624200-142651000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:142629400-142651000	Weak transcription	Left Ventricle	heart
5	chr4:142629400-142654600	Weak transcription	Esophagus	oesophagus
6	chr4:142629400-142655000	Weak transcription	Spleen	Spleen
7	chr4:142629600-142635200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:142629600-142637600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr4:142629600-142657600	Weak transcription	Right Ventricle	heart
10	chr4:142629800-142637400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr4:142630000-142638600	Weak transcription	Aorta	Aorta
12	chr4:142630000-142650400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr4:142630200-142637800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:142631800-142637600	Weak transcription	GM12878-XiMat	blood
15	chr4:142633400-142635200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:142634200-142636200	Enhancers	Hela-S3	cervix
17	chr4:142634400-142635000	Enhancers	NH-A	brain
18	chr4:142634400-142635800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:142634400-142635800	Enhancers	NHLF	lung
20	chr4:142634400-142636000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:142634600-142634800	Enhancers	Ovary	ovary
22	chr4:142634600-142634800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr4:142634600-142634800	Enhancers	A549	lung
24	chr4:142634600-142635200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr4:142634600-142635600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:142634600-142635800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr4:142634600-142635800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr4:142634600-142635800	Enhancers	HSMM	muscle
29	chr4:142634600-142635800	Enhancers	HSMMtube	muscle
30	chr4:142634600-142635800	Enhancers	NHDF-Ad	bronchial
31	chr4:142634600-142635800	Enhancers	NHEK	skin
32	chr4:142634600-142635800	Enhancers	Osteobl	bone
33	chr4:142634600-142636000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr4:142634600-142636000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr4:142634600-142636000	Enhancers	HMEC	breast
36	chr4:142634600-142636200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr4:142634600-142653600	Weak transcription	Colon Smooth Muscle	Colon

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