Variant report

Variant	rs17007575
Chromosome Location	chr4:84786605-84786606
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:84774361..84778567-chr4:84785473..84788840,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10002748	1.00[EUR][1000 genomes]
rs10013930	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17007445	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17007607	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28376947	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28473126	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34489485	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60598117	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72935261	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9307831	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9991447	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv879513	chr4:84612373-84905452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84778400-84787800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:84778600-84787800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:84779800-84787800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:84779800-84787800	Weak transcription	NH-A	brain
5	chr4:84781400-84786800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:84784000-84789000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:84784200-84787800	Weak transcription	Placenta	Placenta
8	chr4:84785400-84788200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:84785800-84787000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:84786000-84788000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:84786400-84787000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:84786400-84787200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr4:84786400-84787200	Enhancers	Fetal Kidney	kidney
14	chr4:84786400-84787400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr4:84786400-84788000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
16	chr4:84786400-84788200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr4:84786400-84788200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr4:84786600-84786800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr4:84786600-84787200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:84786600-84788200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr4:84786600-84789200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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