Variant report

Variant	rs17007605
Chromosome Location	chr4:124846679-124846680
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1347189	0.81[ASN][1000 genomes]
rs1469718	0.81[ASN][1000 genomes]
rs1469720	0.81[ASN][1000 genomes]
rs1821308	0.90[ASN][1000 genomes]
rs2116985	0.81[ASN][1000 genomes]
rs2163876	0.85[CHB][hapmap]
rs2390607	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28525675	0.96[ASN][1000 genomes]
rs3097929	0.90[ASN][1000 genomes]
rs3097931	0.81[ASN][1000 genomes]
rs3113377	0.92[ASN][1000 genomes]
rs3113378	0.89[ASN][1000 genomes]
rs6838706	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv432623	chr4:124780908-124851395	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv830049	chr4:124793932-124955708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv879875	chr4:124821888-124904592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124840000-124857800	Weak transcription	Fetal Intestine Small	intestine
2	chr4:124841000-124849400	Weak transcription	Aorta	Aorta
3	chr4:124841200-124851200	Weak transcription	Left Ventricle	heart
4	chr4:124842600-124854800	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:124844400-124857800	Weak transcription	Fetal Intestine Large	intestine
6	chr4:124845000-124846800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:124845000-124857800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:124845200-124859000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr4:124846000-124847200	Weak transcription	Fetal Lung	lung
10	chr4:124846000-124857800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr4:124846200-124857400	Weak transcription	HSMM	muscle
12	chr4:124846600-124846800	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr4:124846600-124849200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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