Variant report

Variant	rs17007888
Chromosome Location	chr1:220700378-220700379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr1:220700316-220703260	HEK293-T-REx	kidney:	n/a	chr1:220702654-220702663 chr1:220701061-220701070

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220679307..220682266-chr1:220698434..220700635,2	MCF-7	breast:

Variant related genes	Relation type
MARK1	TF binding region

rs_ID	r²[population]
rs6696723	1.00[AFR][1000 genomes]
rs73101833	0.92[AFR][1000 genomes]
rs73101835	1.00[AFR][1000 genomes]
rs74139758	1.00[AFR][1000 genomes]
rs74141913	1.00[AFR][1000 genomes]

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220696400-220700400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:220699600-220700400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:220699600-220700400	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr1:220699600-220700800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:220699800-220700400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
6	chr1:220699800-220700400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:220699800-220700400	Enhancers	Fetal Brain Male	brain
8	chr1:220699800-220700400	Enhancers	Fetal Heart	heart
9	chr1:220699800-220700600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:220699800-220700600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:220700000-220700400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:220700000-220700400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:220700000-220700400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
14	chr1:220700000-220700400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr1:220700000-220700400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
16	chr1:220700000-220700400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr1:220700000-220700400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:220700000-220700400	Bivalent Enhancer	Fetal Lung	lung
19	chr1:220700000-220700600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr1:220700000-220700600	Enhancers	Hela-S3	cervix
21	chr1:220700000-220701000	Flanking Active TSS	Fetal Brain Female	brain
22	chr1:220700200-220700400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:220700200-220700400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
24	chr1:220700200-220700400	Enhancers	Adipose Nuclei	Adipose
25	chr1:220700200-220700400	Enhancers	Brain Germinal Matrix	brain
26	chr1:220700200-220700400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
27	chr1:220700200-220700400	Enhancers	NHDF-Ad	bronchial
28	chr1:220700200-220700600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr1:220700200-220700600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
30	chr1:220700200-220700600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
31	chr1:220700200-220702000	Active TSS	Brain Hippocampus Middle	brain
32	chr1:220700200-220703600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr1:220700200-220704600	Active TSS	Brain Inferior Temporal Lobe	brain

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