Variant report

Variant	rs17008669
Chromosome Location	chr4:120924516-120924517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17008651	1.00[AFR][1000 genomes]
rs17008652	1.00[AFR][1000 genomes]
rs17009087	1.00[AFR][1000 genomes]
rs17009528	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv879850	chr4:120898509-120969089	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120919200-120931000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:120921800-120926000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:120922200-120925000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:120922400-120924600	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:120922400-120924800	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:120922600-120924600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:120922600-120925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:120923400-120925200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr4:120923800-120924800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr4:120923800-120926200	Weak transcription	Right Atrium	heart
11	chr4:120924400-120924800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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