Variant report

Variant	rs17008896
Chromosome Location	chr4:85354381-85354382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10005121	0.96[ASN][1000 genomes]
rs10017032	0.98[ASN][1000 genomes]
rs1003159	0.98[ASN][1000 genomes]
rs1003160	0.98[ASN][1000 genomes]
rs1444962	0.98[ASN][1000 genomes]
rs1992653	0.98[ASN][1000 genomes]
rs28513631	0.98[ASN][1000 genomes]
rs28736410	0.98[ASN][1000 genomes]
rs4261980	0.98[ASN][1000 genomes]
rs58282981	0.82[EUR][1000 genomes]
rs61251737	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72955261	0.98[ASN][1000 genomes]
rs72955263	0.98[ASN][1000 genomes]
rs72955265	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7686486	0.98[ASN][1000 genomes]
rs7692183	0.92[ASN][1000 genomes]
rs895118	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85353600-85354600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:85353800-85354400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:85354000-85354400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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