Variant report

Variant	rs17009469
Chromosome Location	chr2:123918648-123918649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1112020	0.84[ASN][1000 genomes]
rs1589209	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17009474	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34633334	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35190664	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35585209	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36067069	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6751038	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7578225	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492280	chr2:123447662-123973577	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2760647	chr2:123678437-124619697	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv998754	chr2:123898234-123930964	Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2755383	chr2:123915791-123928492	Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:123918600-123919200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:123918600-123919200	Enhancers	Fetal Lung	lung
3	chr2:123918600-123919400	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links