Variant report

Variant	rs17009740
Chromosome Location	chr2:30784282-30784283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11891646	0.87[AMR][1000 genomes]
rs17009706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009714	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17009810	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17009876	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4476391	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs58942696	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6714611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6716154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6734928	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6736148	1.00[CEU][hapmap]
rs6737498	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6742360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6745747	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7571421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7586675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7593659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7596130	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30749000-30812600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr2:30757800-30809000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr2:30758200-30795000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:30758600-30853800	Weak transcription	Thymus	Thymus
5	chr2:30758800-30784400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr2:30758800-30785000	Weak transcription	Left Ventricle	heart
7	chr2:30758800-30809600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr2:30759000-30785200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr2:30759200-30805600	Weak transcription	K562	blood
10	chr2:30759400-30785000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:30759400-30785000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr2:30759400-30785000	Weak transcription	Dnd41	blood
13	chr2:30759600-30786000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr2:30764000-30792400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:30765000-30793600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr2:30766800-30810200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:30773400-30792200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr2:30773800-30785000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr2:30774200-30785200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr2:30774200-30793200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr2:30774600-30785200	Weak transcription	Primary B cells from peripheral blood	blood
22	chr2:30774600-30790200	Weak transcription	A549	lung
23	chr2:30774600-30790400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr2:30774800-30785000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr2:30774800-30812000	Weak transcription	Fetal Lung	lung
26	chr2:30775000-30785600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr2:30775600-30785600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr2:30777000-30815800	Weak transcription	Fetal Intestine Small	intestine
29	chr2:30777400-30786400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr2:30779400-30785200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr2:30779400-30786000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr2:30781000-30786600	Weak transcription	NHDF-Ad	bronchial
33	chr2:30781200-30785000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr2:30781200-30795200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr2:30781400-30788600	Weak transcription	Pancreas	Pancrea
36	chr2:30781800-30785000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr2:30781800-30785000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr2:30781800-30788600	Weak transcription	Ovary	ovary
39	chr2:30782600-30785200	Weak transcription	Fetal Thymus	thymus
40	chr2:30782600-30788000	Weak transcription	NHLF	lung
41	chr2:30782800-30790400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr2:30783000-30788800	Weak transcription	Fetal Heart	heart
43	chr2:30783000-30793000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr2:30783400-30786400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr2:30783400-30788600	Weak transcription	Osteobl	bone
46	chr2:30783400-30791800	Weak transcription	NHEK	skin
47	chr2:30783400-30806000	Weak transcription	GM12878-XiMat	blood
48	chr2:30783400-30819800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr2:30783600-30785600	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr2:30783600-30788600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links