Variant report

Variant	rs17010473
Chromosome Location	chr2:31142643-31142644
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10175136	0.95[ASN][1000 genomes]
rs10188172	1.00[ASN][1000 genomes]
rs57976918	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs731325	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833659	chr2:31020572-31171505	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31122200-31143800	Weak transcription	Esophagus	oesophagus
2	chr2:31122800-31191400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:31124600-31146800	Weak transcription	NHEK	skin
4	chr2:31127400-31159600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:31130600-31152000	Weak transcription	Fetal Brain Female	brain
6	chr2:31132000-31146400	Weak transcription	HMEC	breast
7	chr2:31132200-31146800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr2:31132200-31149000	Weak transcription	Spleen	Spleen
9	chr2:31133800-31146400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:31133800-31146400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:31134000-31146600	Weak transcription	Brain Germinal Matrix	brain
12	chr2:31134400-31155600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr2:31134800-31146200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:31134800-31146400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:31135000-31143600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr2:31139400-31147600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:31141600-31160800	Weak transcription	Lung	lung
18	chr2:31142200-31144000	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr2:31142600-31152400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links