Variant report

Variant	rs17010948
Chromosome Location	chr10:49812917-49812918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDFY4-2	chr10:49812817-49813142	ENSG00000250000

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7914253	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv540623	chr10:49805087-49819765	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv540624	chr10:49805087-49822634	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49810000-49813000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:49810400-49813000	Flanking Active TSS	HUVEC	blood vessel
3	chr10:49810600-49813000	Flanking Active TSS	HMEC	breast
4	chr10:49811200-49813600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:49811200-49813600	Active TSS	HSMMtube	muscle
6	chr10:49811200-49813600	Active TSS	NHDF-Ad	bronchial
7	chr10:49811800-49813400	Active TSS	Brain Hippocampus Middle	brain
8	chr10:49811800-49813600	Active TSS	Brain Substantia Nigra	brain
9	chr10:49811800-49813600	Active TSS	HSMM	muscle
10	chr10:49812000-49813000	Bivalent Enhancer	Stomach Mucosa	stomach
11	chr10:49812000-49813600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr10:49812000-49813600	Active TSS	NHLF	lung
13	chr10:49812200-49813000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:49812200-49813000	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:49812200-49813000	Flanking Active TSS	Colonic Mucosa	Colon
16	chr10:49812200-49813000	Enhancers	Gastric	stomach
17	chr10:49812200-49813000	Flanking Active TSS	Ovary	ovary
18	chr10:49812200-49813200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:49812200-49813200	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr10:49812200-49813200	Enhancers	Lung	lung
21	chr10:49812200-49813200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
22	chr10:49812200-49813400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:49812200-49813600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
24	chr10:49812200-49813600	Active TSS	Rectal Smooth Muscle	rectum
25	chr10:49812200-49813600	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
26	chr10:49812200-49813800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
27	chr10:49812400-49813000	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
28	chr10:49812400-49813200	Flanking Active TSS	Pancreas	Pancrea
29	chr10:49812400-49813400	Active TSS	Brain Cingulate Gyrus	brain
30	chr10:49812400-49813400	Flanking Active TSS	Left Ventricle	heart
31	chr10:49812400-49813400	Bivalent/Poised TSS	NHEK	skin
32	chr10:49812400-49813600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:49812400-49813600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
34	chr10:49812400-49813600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
35	chr10:49812400-49813600	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr10:49812400-49813600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:49812400-49813600	Active TSS	NH-A	brain
38	chr10:49812400-49813600	Active TSS	Osteobl	bone
39	chr10:49812400-49813800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
40	chr10:49812600-49813000	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:49812600-49813000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
42	chr10:49812600-49813000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr10:49812600-49813000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr10:49812600-49813000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
45	chr10:49812600-49813000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
46	chr10:49812600-49813000	Flanking Active TSS	Right Atrium	heart
47	chr10:49812600-49813200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr10:49812600-49813200	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
49	chr10:49812600-49813200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
50	chr10:49812600-49813200	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood

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