Variant report

Variant	rs17011024
Chromosome Location	chr4:86751384-86751385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11936781	0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12498568	0.92[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12506184	0.98[ASN][1000 genomes]
rs1563000	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17010961	0.83[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs17011002	0.89[ASN][1000 genomes]
rs17011039	0.99[ASN][1000 genomes]
rs1823762	0.92[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs57129466	0.98[ASN][1000 genomes]
rs57343585	0.98[ASN][1000 genomes]
rs60565316	0.96[ASN][1000 genomes]
rs61163122	0.98[ASN][1000 genomes]
rs72976750	0.89[ASN][1000 genomes]
rs72976751	0.89[ASN][1000 genomes]
rs72978881	0.98[ASN][1000 genomes]
rs896656	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879518	chr4:86739805-86778943	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv470049	chr4:86750699-86776488	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86737600-86763200	Weak transcription	Primary B cells from cord blood	blood
2	chr4:86747800-86752600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr4:86749400-86752600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:86749400-86752800	Weak transcription	Left Ventricle	heart
5	chr4:86749400-86753200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr4:86749400-86753200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:86749400-86753200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:86749400-86753200	Weak transcription	Gastric	stomach
9	chr4:86749400-86754400	Weak transcription	Right Ventricle	heart
10	chr4:86749400-86758200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:86749400-86761600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:86749400-86787600	Weak transcription	Pancreas	Pancrea
13	chr4:86749600-86753000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr4:86749600-86753200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:86749600-86753200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:86749600-86754600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:86749600-86761200	Weak transcription	Ovary	ovary
18	chr4:86749600-86763600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr4:86749800-86751600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr4:86749800-86752800	Weak transcription	Right Atrium	heart
21	chr4:86749800-86753000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:86749800-86753000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr4:86749800-86753000	Weak transcription	Aorta	Aorta
24	chr4:86749800-86753200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr4:86749800-86758000	Weak transcription	NHLF	lung
26	chr4:86750000-86751600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:86750000-86753200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr4:86750000-86754000	Weak transcription	Adipose Nuclei	Adipose
29	chr4:86750000-86754200	Weak transcription	Fetal Intestine Small	intestine
30	chr4:86750000-86757800	Weak transcription	Fetal Stomach	stomach
31	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr4:86750200-86751800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:86750200-86752800	Weak transcription	Fetal Lung	lung
34	chr4:86750400-86751600	Enhancers	Fetal Heart	heart
35	chr4:86750600-86751600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:86750600-86751600	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr4:86750600-86751600	Enhancers	HSMM	muscle
38	chr4:86750600-86751600	Enhancers	NHDF-Ad	bronchial
39	chr4:86750600-86752200	Enhancers	Stomach Mucosa	stomach
40	chr4:86750600-86753200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr4:86750800-86751400	Weak transcription	Fetal Muscle Leg	muscle
42	chr4:86750800-86751600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr4:86750800-86751600	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr4:86750800-86751600	Enhancers	A549	lung
45	chr4:86750800-86752000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr4:86750800-86753200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr4:86750800-86754400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr4:86751000-86751400	Enhancers	Pancreatic Islets	Pancreatic Islet
49	chr4:86751000-86751600	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr4:86751000-86751600	Enhancers	Osteobl	bone

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