Variant report
| Variant | rs17011132 |
|---|---|
| Chromosome Location | chr2:124977794-124977795 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs1170606 | 1.00[YRI][hapmap] |
| rs1170610 | 1.00[YRI][hapmap] |
| rs17011083 | 1.00[YRI][hapmap] |
| rs17011234 | 0.81[AFR][1000 genomes] |
| rs17011241 | 0.81[AFR][1000 genomes] |
| rs17011244 | 0.81[AFR][1000 genomes] |
| rs17011300 | 0.81[AFR][1000 genomes] |
| rs17319827 | 1.00[YRI][hapmap] |
| rs57057169 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs891410 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531408 | chr2:124727329-125011247 | Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv874989 | chr2:124892592-125176030 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
