Variant report

Variant	rs17011293
Chromosome Location	chr4:86932021-86932022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10516772	1.00[AMR][1000 genomes]
rs17011302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17011575	1.00[AMR][1000 genomes]
rs6822338	1.00[AMR][1000 genomes]
rs733245	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86889400-86935000	Weak transcription	Psoas Muscle	Psoas
2	chr4:86916800-86935800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:86916800-86985400	Weak transcription	Ovary	ovary
4	chr4:86917000-86932400	Weak transcription	Fetal Lung	lung
5	chr4:86917000-86932400	Weak transcription	Right Ventricle	heart
6	chr4:86917000-86933800	Weak transcription	Gastric	stomach
7	chr4:86917000-86933800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:86917000-86935200	Weak transcription	Left Ventricle	heart
9	chr4:86917000-86935800	Weak transcription	Spleen	Spleen
10	chr4:86917000-86954000	Weak transcription	Pancreas	Pancrea
11	chr4:86917400-86940400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:86919400-86941200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:86920200-86933800	Weak transcription	Aorta	Aorta
14	chr4:86921800-86932200	Weak transcription	Fetal Heart	heart
15	chr4:86922800-86935200	Weak transcription	Right Atrium	heart
16	chr4:86925400-86937200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:86925600-86932400	Weak transcription	HSMM	muscle
18	chr4:86925600-86935000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:86925600-86935200	Weak transcription	Adipose Nuclei	Adipose
20	chr4:86925600-86935600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr4:86925600-86937400	Weak transcription	Fetal Kidney	kidney
22	chr4:86927400-86935400	Weak transcription	Primary B cells from cord blood	blood
23	chr4:86928200-86932200	Weak transcription	HSMMtube	muscle
24	chr4:86928400-86937800	Weak transcription	Fetal Stomach	stomach
25	chr4:86928600-86953400	Weak transcription	Fetal Muscle Leg	muscle
26	chr4:86931000-86935200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr4:86931600-86933200	Enhancers	NHDF-Ad	bronchial
28	chr4:86931600-86937600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:86931800-86932600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:86931800-86932800	Enhancers	NH-A	brain
31	chr4:86931800-86933000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr4:86931800-86933200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:86931800-86933600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:86931800-86937600	Enhancers	Osteobl	bone
35	chr4:86932000-86932400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr4:86932000-86932400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr4:86932000-86932600	Enhancers	HUVEC	blood vessel
38	chr4:86932000-86932800	Enhancers	NHLF	lung

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