Variant report

Variant	rs17011606
Chromosome Location	chr3:22597529-22597530
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10510531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066782	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13069748	0.86[CEU][hapmap]
rs13089218	1.00[ASN][1000 genomes]
rs13096688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096828	0.86[CEU][hapmap]
rs1449913	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449914	0.86[CEU][hapmap]
rs1449915	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1562739	0.86[CEU][hapmap]
rs17011529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17011532	1.00[CEU][hapmap]
rs17011536	0.87[CEU][hapmap]
rs34474268	0.90[EUR][1000 genomes]
rs34845054	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4257568	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66761261	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6764739	1.00[ASN][1000 genomes]
rs67696934	0.92[EUR][1000 genomes]
rs6773125	1.00[ASN][1000 genomes]
rs67974368	0.92[EUR][1000 genomes]
rs6806853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73033654	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460477	chr3:22532660-22920246	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv589941	chr3:22532660-22920246	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2751995	chr3:22551005-22600196	Weak transcription Active TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2763740	chr3:22560172-22609552	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv998598	chr3:22560733-22608956	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv997515	chr3:22560733-22612794	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1012343	chr3:22560733-22811382	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv470505	chr3:22565243-22609529	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv525062	chr3:22571896-22609529	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv589943	chr3:22574169-22609529	Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv589944	chr3:22590688-22631593	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22597000-22598200	Enhancers	Fetal Lung	lung
2	chr3:22597400-22598400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:22597400-22598600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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