Variant report

Variant	rs17011645
Chromosome Location	chr4:87185848-87185849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12504532	1.00[AFR][1000 genomes]
rs17011653	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs17011659	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17011926	1.00[AFR][1000 genomes]
rs4693753	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87149200-87186200	Weak transcription	Ovary	ovary
2	chr4:87183000-87187200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:87184200-87187000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:87184200-87188600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:87184200-87188600	Weak transcription	Brain Substantia Nigra	brain
6	chr4:87185400-87186000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:87185400-87186000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:87185400-87186000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:87185600-87186000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:87185600-87186000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:87185600-87186000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr4:87185800-87186000	Enhancers	Brain Germinal Matrix	brain
13	chr4:87185800-87186200	Enhancers	Brain Cingulate Gyrus	brain
14	chr4:87185800-87186800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr4:87185800-87188600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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