Variant report

Variant	rs17011890
Chromosome Location	chr4:87347538-87347539
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87342891..87345653-chr4:87346194..87349173,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11938088	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs11939109	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs12503051	0.87[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12508801	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs12511114	0.85[ASN][1000 genomes]
rs12511135	0.85[ASN][1000 genomes]
rs12512698	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs12644920	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs17011731	0.85[JPT][hapmap]
rs17011843	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs17011950	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2199307	0.86[JPT][hapmap]
rs2869444	0.89[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2904095	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2904105	0.85[ASN][1000 genomes]
rs35334656	0.85[ASN][1000 genomes]
rs4235079	0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs4235080	0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs4488910	0.85[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4693145	0.85[ASN][1000 genomes]
rs55642851	0.85[ASN][1000 genomes]
rs56054148	0.85[ASN][1000 genomes]
rs56805412	0.85[ASN][1000 genomes]
rs59277757	0.81[ASN][1000 genomes]
rs60079003	0.85[ASN][1000 genomes]
rs61686149	0.85[ASN][1000 genomes]
rs6531925	0.86[JPT][hapmap]
rs6817640	0.85[ASN][1000 genomes]
rs6829684	0.85[ASN][1000 genomes]
rs6843457	0.85[ASN][1000 genomes]
rs6849834	0.85[ASN][1000 genomes]
rs6856688	0.86[JPT][hapmap]
rs73835402	0.85[ASN][1000 genomes]
rs73838904	0.85[ASN][1000 genomes]
rs73838906	0.85[ASN][1000 genomes]
rs7669675	0.85[JPT][hapmap]
rs7675359	0.85[ASN][1000 genomes]
rs7697335	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1012836	chr4:87279206-87643558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17011890	HSD17B11	cis	cerebellum	SCAN
rs17011890	C2orf69	trans	cerebellum	SCAN
rs17011890	HDLBP	trans	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87342000-87354200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:87342000-87372800	Weak transcription	Aorta	Aorta
3	chr4:87342800-87350200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:87342800-87353000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:87343000-87359600	Weak transcription	Fetal Stomach	stomach
6	chr4:87344800-87352800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:87344800-87352800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:87346600-87352800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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