Variant report

Variant	rs17012619
Chromosome Location	chr2:33389976-33389977
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11689160	1.00[YRI][hapmap]
rs17012604	1.00[AFR][1000 genomes]
rs17012612	1.00[YRI][hapmap]
rs17012615	1.00[YRI][hapmap]
rs17012621	1.00[YRI][hapmap]
rs17012630	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17012639	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998167	chr2:33074313-33541100	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535623	chr2:33074313-33541100	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
5	esv33628	chr2:33257484-33455355	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv873789	chr2:33297967-33390188	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv873790	chr2:33369582-33466483	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33369800-33404000	Weak transcription	Right Ventricle	heart
2	chr2:33371600-33395600	Weak transcription	Psoas Muscle	Psoas
3	chr2:33375000-33408400	Weak transcription	Fetal Muscle Leg	muscle
4	chr2:33384400-33391800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:33384400-33391800	Weak transcription	Ovary	ovary
6	chr2:33384400-33392000	Weak transcription	Left Ventricle	heart
7	chr2:33384600-33390800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr2:33384800-33390200	Weak transcription	HUVEC	blood vessel
9	chr2:33384800-33392400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr2:33386200-33390000	Weak transcription	NHLF	lung
11	chr2:33386200-33392600	Weak transcription	Aorta	Aorta
12	chr2:33387800-33390000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:33388600-33392000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:33388800-33394000	Weak transcription	Fetal Lung	lung
15	chr2:33389600-33390200	Genic enhancers	Muscle Satellite Cultured Cells	--
16	chr2:33389600-33390200	Enhancers	Fetal Heart	heart
17	chr2:33389800-33390200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:33389800-33390200	Enhancers	Right Atrium	heart
19	chr2:33389800-33390400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr2:33389800-33390400	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr2:33389800-33391000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:33389800-33391200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr2:33389800-33391600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:33389800-33391600	Enhancers	Osteobl	bone
25	chr2:33389800-33393200	Enhancers	NH-A	brain
26	chr2:33389800-33394400	Enhancers	NHDF-Ad	bronchial

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