Variant report

Variant	rs17012826
Chromosome Location	chr2:76743831-76743832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10181633	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11126524	0.88[EUR][1000 genomes]
rs11126525	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11126531	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13035292	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1316911	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1921250	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1997448	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2178516	0.97[EUR][1000 genomes]
rs2860774	0.89[EUR][1000 genomes]
rs2860775	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6726434	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6745081	0.98[EUR][1000 genomes]
rs6760681	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874317	chr2:76554077-76890567	Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76742000-76744000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:76742800-76744000	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links