Variant report

Variant	rs17013169
Chromosome Location	chr4:129288791-129288792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17013158	0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17013197	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58251203	1.00[EUR][1000 genomes]
rs58882042	1.00[EUR][1000 genomes]
rs59198218	1.00[EUR][1000 genomes]
rs60082278	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73846936	1.00[EUR][1000 genomes]
rs73848751	1.00[EUR][1000 genomes]
rs73848781	1.00[EUR][1000 genomes]
rs73848783	1.00[EUR][1000 genomes]
rs7655151	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129270600-129291800	Weak transcription	Aorta	Aorta
2	chr4:129280400-129290400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:129283200-129291600	Weak transcription	Fetal Heart	heart
4	chr4:129283200-129292000	Weak transcription	Osteobl	bone
5	chr4:129283400-129291600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:129284600-129288800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:129288600-129289000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:129288600-129290800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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