Variant report

Variant	rs17013261
Chromosome Location	chr4:129314562-129314563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:129309240..129311697-chr4:129314341..129316608,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17013279	0.89[YRI][hapmap];0.92[AFR][1000 genomes]
rs17013283	0.89[YRI][hapmap];0.92[AFR][1000 genomes]
rs17013309	0.80[AFR][1000 genomes]
rs60266924	0.80[AFR][1000 genomes]
rs60416613	0.80[AFR][1000 genomes]
rs60685389	0.92[AFR][1000 genomes]
rs72677892	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129308200-129317000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:129309000-129314600	Weak transcription	Gastric	stomach
3	chr4:129309600-129314600	Weak transcription	Left Ventricle	heart
4	chr4:129310200-129316000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:129311000-129315200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:129311200-129314600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:129311400-129314600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:129311400-129314600	Weak transcription	Psoas Muscle	Psoas
9	chr4:129311400-129316000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:129311600-129314600	Weak transcription	Fetal Stomach	stomach
11	chr4:129312000-129314600	Weak transcription	Pancreas	Pancrea
12	chr4:129312000-129315400	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr4:129313800-129315000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:129313800-129315000	Enhancers	Fetal Intestine Small	intestine
15	chr4:129313800-129315200	Enhancers	NHDF-Ad	bronchial
16	chr4:129314000-129314600	Enhancers	Stomach Smooth Muscle	stomach
17	chr4:129314000-129314800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:129314000-129314800	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr4:129314000-129314800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr4:129314000-129314800	Flanking Active TSS	Fetal Heart	heart
21	chr4:129314000-129314800	Enhancers	Fetal Intestine Large	intestine
22	chr4:129314000-129314800	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr4:129314000-129314800	Enhancers	HSMM	muscle
24	chr4:129314000-129314800	Enhancers	NHEK	skin
25	chr4:129314000-129315000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:129314000-129315000	Enhancers	Muscle Satellite Cultured Cells	--
27	chr4:129314000-129315000	Enhancers	Duodenum Mucosa	Duodenum
28	chr4:129314000-129315000	Enhancers	K562	blood
29	chr4:129314000-129315000	Enhancers	Osteobl	bone
30	chr4:129314000-129315200	Enhancers	Colon Smooth Muscle	Colon
31	chr4:129314000-129315200	Enhancers	Stomach Mucosa	stomach
32	chr4:129314000-129315400	Enhancers	Hela-S3	cervix
33	chr4:129314000-129317000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:129314000-129317200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:129314200-129314800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr4:129314200-129315000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr4:129314400-129314600	Enhancers	Brain Substantia Nigra	brain
38	chr4:129314400-129314600	Enhancers	A549	lung
39	chr4:129314400-129314800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr4:129314400-129314800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr4:129314400-129314800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:129314400-129314800	Enhancers	Adipose Nuclei	Adipose
43	chr4:129314400-129314800	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr4:129314400-129314800	Enhancers	Rectal Smooth Muscle	rectum
45	chr4:129314400-129314800	Enhancers	Small Intestine	intestine
46	chr4:129314400-129314800	Enhancers	NHLF	lung
47	chr4:129314400-129315000	Enhancers	Fetal Brain Female	brain
48	chr4:129314400-129315000	Enhancers	Fetal Kidney	kidney
49	chr4:129314400-129315000	Enhancers	Fetal Muscle Leg	muscle
50	chr4:129314400-129315000	Enhancers	Ovary	ovary

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