Variant report

Variant	rs17013272
Chromosome Location	chr2:33765955-33765956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10495793	0.90[CHB][hapmap];0.81[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11687777	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11690827	0.81[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap]
rs11691097	1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13012738	0.83[ASN][1000 genomes]
rs13015278	0.93[ASN][1000 genomes]
rs13016373	0.93[ASN][1000 genomes]
rs1378726	0.95[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.92[ASN][1000 genomes]
rs2278955	0.85[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs2278956	0.85[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs2305571	0.88[CHD][hapmap];0.85[JPT][hapmap];0.87[LWK][hapmap];0.83[MKK][hapmap];0.84[TSI][hapmap]
rs2305574	0.81[JPT][hapmap]
rs2305576	0.86[CHD][hapmap]
rs35243063	0.89[ASN][1000 genomes]
rs3754823	0.88[CHD][hapmap]
rs62149023	0.98[ASN][1000 genomes]
rs62149027	0.83[ASN][1000 genomes]
rs67624702	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72785961	0.83[ASN][1000 genomes]
rs7592762	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap];0.94[ASN][1000 genomes]
rs936142	0.81[CHB][hapmap];0.81[JPT][hapmap];0.91[YRI][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:95 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv433177	chr2:33758456-33765955	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv456130	chr2:33758456-33765955	Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv456141	chr2:33758456-33765955	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv581310	chr2:33758456-33765955	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	esv1825472	chr2:33758456-33766808	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	esv1828982	chr2:33758456-33766808	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
7	esv1828986	chr2:33758456-33772525	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	nsv516338	chr2:33758456-33780231	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
9	esv1805241	chr2:33759166-33772478	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	esv1846592	chr2:33761727-33772478	ZNF genes & repeats Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
11	esv1802072	chr2:33762787-33767607	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
12	esv1805890	chr2:33762787-33767607	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
13	esv1821174	chr2:33762787-33768807	Strong transcription Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
14	esv1801323	chr2:33762787-33772478	Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
15	esv1845579	chr2:33762787-33772478	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
16	nsv435723	chr2:33763193-33767856	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
17	esv1827697	chr2:33764248-33767607	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
18	nsv820684	chr2:33764338-33767807	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
19	esv3460995	chr2:33764377-33768146	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
20	esv3460996	chr2:33764377-33768146	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
21	esv1800939	chr2:33764410-33767807	Strong transcription Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
22	esv1801101	chr2:33764410-33767807	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
23	esv1804331	chr2:33764410-33767807	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
24	esv1811876	chr2:33764410-33767807	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
25	esv1817625	chr2:33764410-33767807	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
26	esv1821195	chr2:33764410-33767807	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
27	esv1826979	chr2:33764410-33767807	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
28	esv1832350	chr2:33764410-33767807	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
29	esv1844799	chr2:33764410-33767807	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
30	esv19946	chr2:33764473-33767693	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
31	esv1794563	chr2:33764571-33767607	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
32	esv1795870	chr2:33764571-33767607	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
33	esv1805017	chr2:33764571-33767607	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
34	esv1813146	chr2:33764571-33767607	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
35	esv1821372	chr2:33764571-33767607	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
36	esv1831572	chr2:33764571-33767607	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
37	esv1845673	chr2:33764571-33767607	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
38	esv1847141	chr2:33764571-33768807	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
39	esv1843687	chr2:33764571-33769665	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
40	esv1809730	chr2:33764571-33770621	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
41	esv1849967	chr2:33764571-33770621	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
42	esv1817706	chr2:33764571-33772478	Enhancers Strong transcription Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
43	esv1821368	chr2:33764571-33772478	Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
44	esv1825490	chr2:33764647-33766799	Enhancers Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
45	esv1830819	chr2:33764647-33766799	Weak transcription Strong transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
46	esv1840107	chr2:33764647-33766799	Weak transcription Enhancers Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
47	esv1841090	chr2:33764647-33766799	Weak transcription Enhancers Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
48	nsv819369	chr2:33764980-33768157	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
49	esv1848756	chr2:33765064-33767807	Strong transcription Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
50	nsv581311	chr2:33765172-33766799	Weak transcription Enhancers Strong transcription	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33710400-33775400	Weak transcription	Pancreas	Pancrea
2	chr2:33738600-33782800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr2:33738800-33777200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr2:33740800-33790000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr2:33747800-33780200	Weak transcription	Brain Anterior Caudate	brain
6	chr2:33748000-33774400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr2:33748000-33790400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:33748200-33780200	Weak transcription	Brain Angular Gyrus	brain
9	chr2:33755000-33779800	Weak transcription	Small Intestine	intestine
10	chr2:33755200-33767800	Weak transcription	Liver	Liver
11	chr2:33755400-33779800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr2:33757000-33780000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:33757200-33809800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr2:33759000-33766600	Strong transcription	Primary B cells from peripheral blood	blood
15	chr2:33760800-33782200	Weak transcription	Brain Substantia Nigra	brain
16	chr2:33760800-33783600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr2:33761000-33789000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr2:33761200-33768200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr2:33761200-33771000	Weak transcription	Right Ventricle	heart
20	chr2:33761200-33774200	Weak transcription	Fetal Muscle Leg	muscle
21	chr2:33761200-33783800	Weak transcription	Psoas Muscle	Psoas
22	chr2:33762000-33780200	Weak transcription	Ovary	ovary
23	chr2:33762200-33772200	Weak transcription	Left Ventricle	heart
24	chr2:33762200-33775800	Weak transcription	Lung	lung
25	chr2:33762200-33777800	Weak transcription	Adipose Nuclei	Adipose
26	chr2:33762200-33779400	Weak transcription	Spleen	Spleen
27	chr2:33762200-33779600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr2:33762200-33809800	Weak transcription	Aorta	Aorta
29	chr2:33762600-33774200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr2:33763200-33780200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr2:33764800-33766800	Enhancers	Fetal Heart	heart
32	chr2:33764800-33771600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr2:33765000-33768000	Weak transcription	Primary B cells from cord blood	blood
34	chr2:33765200-33766000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr2:33765200-33766000	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr2:33765200-33766000	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr2:33765400-33766200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr2:33765600-33775400	Weak transcription	Brain Hippocampus Middle	brain
39	chr2:33765600-33784400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr2:33765800-33768200	Weak transcription	GM12878-XiMat	blood
41	chr2:33765800-33777800	Weak transcription	NHDF-Ad	bronchial

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