Variant report

Variant	rs17014251
Chromosome Location	chr3:24202457-24202458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24196174..24198881-chr3:24200287..24202945,2	MCF-7	breast:
2	chr3:24191569..24194138-chr3:24202031..24204441,2	K562	blood:
3	chr3:24195944..24197573-chr3:24200663..24202701,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62255844	0.97[AFR][1000 genomes]
rs67615423	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24180000-24206600	Weak transcription	Pancreas	Pancrea
2	chr3:24186200-24230800	Weak transcription	Fetal Intestine Large	intestine
3	chr3:24188200-24203400	Weak transcription	Right Atrium	heart
4	chr3:24188200-24203600	Weak transcription	Liver	Liver
5	chr3:24188200-24210000	Weak transcription	Gastric	stomach
6	chr3:24188200-24215200	Weak transcription	Right Ventricle	heart
7	chr3:24194000-24203000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr3:24197400-24203000	Weak transcription	Aorta	Aorta
9	chr3:24198800-24203000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:24198800-24203400	Weak transcription	Psoas Muscle	Psoas
11	chr3:24198800-24203600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr3:24198800-24218800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:24199400-24225800	Weak transcription	Fetal Intestine Small	intestine
14	chr3:24199800-24203600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr3:24201400-24202800	Enhancers	Spleen	Spleen
16	chr3:24201600-24203600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:24201600-24204000	Enhancers	H9 Cell Line	embryonic stem cell
18	chr3:24201800-24202600	Enhancers	Brain Anterior Caudate	brain
19	chr3:24201800-24204200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr3:24202000-24202600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:24202000-24202800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:24202200-24202600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr3:24202200-24202600	Enhancers	NHLF	lung
24	chr3:24202200-24202800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:24202200-24202800	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr3:24202200-24203000	Enhancers	Stomach Smooth Muscle	stomach
27	chr3:24202200-24203400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr3:24202200-24203400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr3:24202200-24203600	Enhancers	Fetal Lung	lung
30	chr3:24202200-24204000	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr3:24202200-24204200	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr3:24202200-24205000	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr3:24202200-24208000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr3:24202400-24203400	Weak transcription	Lung	lung
35	chr3:24202400-24203400	Weak transcription	Ovary	ovary
36	chr3:24202400-24203600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr3:24202400-24203600	Weak transcription	Placenta	Placenta
38	chr3:24202400-24203800	Enhancers	Adipose Nuclei	Adipose
39	chr3:24202400-24204800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:24202400-24206200	Weak transcription	Left Ventricle	heart
41	chr3:24202400-24218000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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