Variant report

Variant	rs17014326
Chromosome Location	chr1:209515285-209515286
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1014817	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10494922	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10494924	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11586524	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12753447	0.81[EUR][1000 genomes]
rs1395748	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1857966	0.91[CEU][hapmap];0.81[CHB][hapmap];0.80[EUR][1000 genomes]
rs1876409	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2055698	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2246571	0.91[EUR][1000 genomes]
rs2247066	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2254757	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2356722	1.00[CEU][hapmap];0.82[CHB][hapmap];0.97[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2660634	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2660638	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2660640	0.83[ASN][1000 genomes]
rs2660641	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2800929	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2843167	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6661759	0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[YRI][hapmap]
rs6674309	0.80[ASN][1000 genomes]
rs6685289	0.84[JPT][hapmap]
rs906347	0.90[CHB][hapmap];0.84[JPT][hapmap];0.86[YRI][hapmap];0.82[ASN][1000 genomes]
rs906348	0.83[JPT][hapmap];0.89[YRI][hapmap]
rs906349	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs906350	0.91[CHB][hapmap];0.84[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs906351	0.90[CHB][hapmap];0.83[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs906353	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209506200-209515600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:209506200-209524600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:209513000-209516800	Enhancers	Fetal Lung	lung
4	chr1:209513000-209517200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:209513000-209518600	Enhancers	Fetal Brain Male	brain
6	chr1:209513600-209516000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:209513600-209517600	Enhancers	Fetal Brain Female	brain
8	chr1:209513800-209516200	Enhancers	Fetal Stomach	stomach
9	chr1:209514200-209516400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:209514400-209515600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:209514400-209515600	Enhancers	Brain Germinal Matrix	brain
12	chr1:209514400-209516000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:209514400-209517200	Enhancers	Fetal Muscle Leg	muscle
14	chr1:209514600-209516000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:209514600-209516800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr1:209514800-209516400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:209515000-209515800	Weak transcription	Colon Smooth Muscle	Colon
18	chr1:209515200-209515600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr1:209515200-209516000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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