Variant report

Variant	rs17014859
Chromosome Location	chr3:24624229-24624230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24624079..24624666-chr3:24725432..24726214,2	MCF-7	breast:
2	chr3:24535513..24537264-chr3:24622149..24624564,2	MCF-7	breast:
3	chr3:24623522..24626153-chr3:24655332..24658320,2	MCF-7	breast:
4	chr3:24622288..24625025-chr3:24625704..24628070,2	K562	blood:
5	chr3:24535816..24538509-chr3:24621418..24627791,6	MCF-7	breast:
6	chr3:24561126..24562915-chr3:24623177..24625946,2	MCF-7	breast:
7	chr3:24563036..24563593-chr3:24624031..24624775,2	MCF-7	breast:
8	chr3:24305304..24306760-chr3:24623707..24624748,5	MCF-7	breast:
9	chr3:24535255..24538695-chr3:24622610..24625331,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17014858	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs6779391	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24618000-24629600	Weak transcription	Right Atrium	heart
2	chr3:24621200-24633400	Weak transcription	K562	blood
3	chr3:24621600-24627400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:24623400-24625000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:24623400-24625000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:24624000-24624400	Enhancers	Brain Germinal Matrix	brain
7	chr3:24624000-24629200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:24624200-24624600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:24624200-24624600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr3:24624200-24624800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr3:24624200-24625000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:24624200-24625000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:24624200-24625000	Enhancers	Psoas Muscle	Psoas
14	chr3:24624200-24625000	Enhancers	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links