Variant report

Variant	rs17015287
Chromosome Location	chr4:142958897-142958898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:142951947..142953584-chr4:142957347..142959849,2	MCF-7	breast:
2	chr4:142942418..142944888-chr4:142957295..142959081,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17015285	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17015306	0.89[YRI][hapmap];0.97[AFR][1000 genomes]
rs28755865	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv830096	chr4:142867099-143023761	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv428775	chr4:142943213-143050195	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1027781	chr4:142943485-143306567	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830097	chr4:142949705-143136372	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142943800-142965400	Weak transcription	Aorta	Aorta
2	chr4:142944200-142962800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr4:142945400-142983200	Weak transcription	Left Ventricle	heart
4	chr4:142947800-142977200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr4:142948200-142959800	Weak transcription	Dnd41	blood
6	chr4:142948400-143029200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:142949400-142977000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:142949600-142977000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr4:142950000-142962200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr4:142950200-142976600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:142954600-142968400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr4:142956600-142960000	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:142956600-142977000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:142956600-142977000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr4:142957000-142959000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr4:142957000-142963000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr4:142957200-142961200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:142957400-142976800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr4:142957600-142959600	Weak transcription	Primary T cells from cord blood	blood
20	chr4:142957800-142959000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:142957800-142959000	Enhancers	HMEC	breast
22	chr4:142957800-142959000	Enhancers	NHEK	skin
23	chr4:142958000-142959200	Enhancers	Fetal Heart	heart
24	chr4:142958200-142963200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:142958200-142975400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr4:142958400-142959000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:142958400-142959000	Flanking Active TSS	A549	lung
28	chr4:142958400-142965000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr4:142958600-142959000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr4:142958600-142959000	Enhancers	Fetal Intestine Small	intestine
31	chr4:142958600-142959800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr4:142958600-142964000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:142958600-142964000	Weak transcription	HSMM	muscle
34	chr4:142958800-142961200	Weak transcription	HUVEC	blood vessel
35	chr4:142958800-142964000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr4:142958800-142964200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr4:142958800-142964600	Weak transcription	NHDF-Ad	bronchial
38	chr4:142958800-142964800	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links