Variant report

Variant	rs17015576
Chromosome Location	chr4:143053332-143053333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143048538..143050644-chr4:143051888..143053940,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17015338	1.00[AMR][1000 genomes]
rs17015912	1.00[AMR][1000 genomes]
rs72718435	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72718496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72720428	1.00[AMR][1000 genomes]
rs72720454	1.00[AMR][1000 genomes]
rs72722429	1.00[AMR][1000 genomes]
rs72722486	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1027781	chr4:142943485-143306567	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830097	chr4:142949705-143136372	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830098	chr4:143050143-143234384	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143010400-143057000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:143018800-143109600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:143025400-143066800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:143030000-143057000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:143031000-143064800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:143034000-143061600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:143039200-143059000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:143042200-143060200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr4:143043400-143089000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:143043600-143056600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr4:143043800-143054000	Weak transcription	Psoas Muscle	Psoas
12	chr4:143045800-143057200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:143046400-143054600	Weak transcription	HSMM	muscle
14	chr4:143046800-143057200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr4:143049600-143057200	Weak transcription	Lung	lung
16	chr4:143049800-143055600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr4:143049800-143114400	Weak transcription	Right Ventricle	heart
18	chr4:143050000-143056600	Weak transcription	Fetal Muscle Leg	muscle
19	chr4:143050000-143079600	Weak transcription	NHDF-Ad	bronchial
20	chr4:143050200-143056200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:143050200-143061000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:143050400-143053400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr4:143050400-143055000	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr4:143050400-143056600	Weak transcription	HSMMtube	muscle
25	chr4:143050400-143062400	Weak transcription	Fetal Stomach	stomach
26	chr4:143050400-143063600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr4:143050600-143059800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr4:143050800-143056200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr4:143050800-143056200	Weak transcription	Dnd41	blood
30	chr4:143051400-143093400	Weak transcription	Left Ventricle	heart
31	chr4:143051600-143054200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr4:143051600-143056600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:143051800-143056800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr4:143051800-143070600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr4:143052000-143053600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr4:143052000-143053600	Weak transcription	HMEC	breast
37	chr4:143052000-143057200	Weak transcription	Aorta	Aorta
38	chr4:143052000-143059800	Weak transcription	NHEK	skin
39	chr4:143052200-143053600	Genic enhancers	Primary T cells fromperipheralblood	blood
40	chr4:143052200-143054000	Weak transcription	Fetal Heart	heart
41	chr4:143052200-143055000	Weak transcription	Primary T cells from cord blood	blood
42	chr4:143052400-143053800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr4:143052400-143053800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:143052400-143054000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr4:143052400-143054200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr4:143052400-143054600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr4:143052400-143061600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr4:143052400-143062600	Weak transcription	Fetal Intestine Small	intestine
49	chr4:143052400-143081400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr4:143052400-143111600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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