Variant report

Variant	rs17015967
Chromosome Location	chr4:90563581-90563582
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MMRN1-2	chr4:90563568-90563671	ENSG00000251095.1
2	lnc-MMRN1-2	chr4:90563568-90563671	ENSG00000251095.1

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10516842	0.85[ASN][1000 genomes]
rs17015982	0.94[ASN][1000 genomes]
rs17015985	0.94[ASN][1000 genomes]
rs17015990	0.94[ASN][1000 genomes]
rs2882783	0.90[ASN][1000 genomes]
rs3857046	0.94[ASN][1000 genomes]
rs4122858	0.94[ASN][1000 genomes]
rs4122859	0.94[ASN][1000 genomes]
rs4449381	0.94[ASN][1000 genomes]
rs56098452	0.94[ASN][1000 genomes]
rs56970479	0.94[ASN][1000 genomes]
rs57360006	0.94[ASN][1000 genomes]
rs57864032	0.94[ASN][1000 genomes]
rs58123417	0.94[ASN][1000 genomes]
rs58951429	0.80[ASN][1000 genomes]
rs58992864	0.94[ASN][1000 genomes]
rs59130061	0.90[ASN][1000 genomes]
rs59580572	0.80[ASN][1000 genomes]
rs60043746	0.84[ASN][1000 genomes]
rs60443785	0.94[ASN][1000 genomes]
rs60639576	0.81[ASN][1000 genomes]
rs61253650	0.94[ASN][1000 genomes]
rs61528967	0.94[ASN][1000 genomes]
rs61631234	0.94[ASN][1000 genomes]
rs62305131	0.94[ASN][1000 genomes]
rs62305132	0.94[ASN][1000 genomes]
rs62305143	0.94[ASN][1000 genomes]
rs62305148	0.94[ASN][1000 genomes]
rs62305149	0.94[ASN][1000 genomes]
rs62305150	0.94[ASN][1000 genomes]
rs62305151	0.94[ASN][1000 genomes]
rs62305152	0.94[ASN][1000 genomes]
rs62305153	0.94[ASN][1000 genomes]
rs62305154	0.90[ASN][1000 genomes]
rs62305155	0.90[ASN][1000 genomes]
rs62305156	0.94[ASN][1000 genomes]
rs62305157	0.94[ASN][1000 genomes]
rs62305158	0.94[ASN][1000 genomes]
rs62306262	0.94[ASN][1000 genomes]
rs62306263	0.94[ASN][1000 genomes]
rs6532183	0.90[ASN][1000 genomes]
rs72884405	0.94[ASN][1000 genomes]
rs7437342	0.94[ASN][1000 genomes]
rs7656703	0.94[ASN][1000 genomes]
rs7682447	0.87[ASN][1000 genomes]
rs9685020	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv879534	chr4:90498133-90591889	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90562600-90566200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:90562800-90566000	Weak transcription	HepG2	liver

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