Variant report

Variant	rs17016279
Chromosome Location	chr4:90770408-90770409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10002435	0.86[CHB][hapmap]
rs1442137	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];0.82[EUR][1000 genomes]
rs1442141	0.82[EUR][1000 genomes]
rs17016168	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[LWK][hapmap]
rs17016183	1.00[CEU][hapmap]
rs17016190	1.00[CEU][hapmap]
rs17016255	1.00[CEU][hapmap]
rs17016316	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2035268	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[LWK][hapmap]
rs3756055	1.00[CEU][hapmap]
rs3756056	1.00[CEU][hapmap]
rs3756057	1.00[CEU][hapmap]
rs3775443	1.00[CEU][hapmap]
rs3775446	1.00[CEU][hapmap]
rs3775447	1.00[CEU][hapmap]
rs3775448	1.00[CEU][hapmap]
rs3775461	1.00[CEU][hapmap]
rs3796661	1.00[ASW][hapmap]
rs3889916	1.00[CEU][hapmap]
rs3889917	1.00[CEU][hapmap]
rs3906824	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[LWK][hapmap]
rs59469055	0.81[AFR][1000 genomes]
rs59718120	0.82[EUR][1000 genomes]
rs62304971	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62304974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6829514	1.00[CEU][hapmap]
rs7676702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684637	1.00[CEU][hapmap]
rs7684892	1.00[CEU][hapmap]
rs7689942	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv879536	chr4:90678541-90775212	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90759600-90771600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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