Variant report

Variant	rs17016680
Chromosome Location	chr3:79043006-79043007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11708079	0.94[EUR][1000 genomes]
rs6766522	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv834744	chr3:78911545-79076470	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79036000-79043600	Weak transcription	Osteobl	bone
2	chr3:79036000-79044200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:79036600-79043400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:79038000-79044200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:79040400-79043400	Enhancers	HepG2	liver
6	chr3:79040600-79043400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:79040800-79043200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:79040800-79062000	Weak transcription	Ovary	ovary
9	chr3:79041400-79044200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr3:79041600-79043200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:79041600-79043400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr3:79041600-79043400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:79041600-79043800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:79041800-79043400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:79041800-79043800	Weak transcription	Fetal Lung	lung
16	chr3:79041800-79044000	Weak transcription	Fetal Kidney	kidney
17	chr3:79042000-79045000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:79042200-79043200	Enhancers	Fetal Brain Male	brain
19	chr3:79042200-79043400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:79042200-79043600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:79042200-79043800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:79042200-79048200	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:79042400-79043200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr3:79042400-79043400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr3:79042600-79043400	Enhancers	H1 Cell Line	embryonic stem cell
26	chr3:79042600-79043400	Enhancers	Brain Anterior Caudate	brain
27	chr3:79042800-79044000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr3:79042800-79044000	Weak transcription	Brain Angular Gyrus	brain
29	chr3:79043000-79043400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:79043000-79044200	Enhancers	Brain Substantia Nigra	brain
31	chr3:79043000-79044600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:79043000-79048600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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