Variant report

Variant	rs17016782
Chromosome Location	chr4:143722274-143722275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11936621	1.00[ASN][1000 genomes]
rs11938151	0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs17016705	1.00[ASN][1000 genomes]
rs17016793	1.00[ASN][1000 genomes]
rs72935929	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72935935	1.00[ASN][1000 genomes]
rs72935969	1.00[ASN][1000 genomes]
rs72950761	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143698800-143738600	Weak transcription	Aorta	Aorta
2	chr4:143709200-143732200	Weak transcription	Left Ventricle	heart
3	chr4:143718600-143736600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:143720200-143733200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:143722000-143722400	Enhancers	Fetal Heart	heart
6	chr4:143722000-143724000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:143722200-143724000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links