Variant report

Variant	rs17017137
Chromosome Location	chr1:211198295-211198296
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17017090	1.00[AFR][1000 genomes]
rs17017115	1.00[AFR][1000 genomes]
rs6660008	0.83[AFR][1000 genomes]
rs7522148	1.00[AFR][1000 genomes]
rs7555592	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4410	chr1:211193724-211210571	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211184800-211198600	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:211190600-211198800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:211192400-211198400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:211192600-211198400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:211192600-211199800	Weak transcription	Brain Substantia Nigra	brain
7	chr1:211192600-211209000	Weak transcription	HSMMtube	muscle
8	chr1:211194400-211209200	Weak transcription	HSMM	muscle
9	chr1:211198200-211198400	Enhancers	Brain Angular Gyrus	brain
10	chr1:211198200-211199000	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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