Variant report

Variant	rs170182
Chromosome Location	chr21:37858023-37858024
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13047783	0.88[ASN][1000 genomes]
rs219759	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs219765	0.91[ASN][1000 genomes]
rs2249115	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2633334	0.99[ASN][1000 genomes]
rs2845764	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2845766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2845769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.99[ASN][1000 genomes]
rs2850102	0.92[ASN][1000 genomes]
rs2850108	0.96[ASN][1000 genomes]
rs2850110	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35599107	0.89[ASN][1000 genomes]
rs35857368	0.91[ASN][1000 genomes]
rs55666618	0.88[ASN][1000 genomes]
rs59059205	0.92[ASN][1000 genomes]
rs59285877	0.92[ASN][1000 genomes]
rs59724458	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv33286	chr21:37827016-37861556	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv587470	chr21:37834641-37872447	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37851400-37860000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr21:37852000-37871000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr21:37852200-37860000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr21:37852400-37859800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr21:37852400-37864800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr21:37852600-37860000	Weak transcription	Stomach Mucosa	stomach
7	chr21:37853200-37863600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr21:37854200-37859800	Weak transcription	HUVEC	blood vessel
9	chr21:37856400-37859000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr21:37856400-37860000	Weak transcription	Pancreas	Pancrea
11	chr21:37856600-37860000	Weak transcription	HepG2	liver
12	chr21:37857000-37858400	Weak transcription	Liver	Liver
13	chr21:37857600-37858600	Enhancers	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links