Variant report

Variant	rs17019000
Chromosome Location	chr2:36755937-36755938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36755319..36758210-chr2:36763751..36765429,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17018986	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17019002	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17480811	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs72866891	1.00[EUR][1000 genomes]
rs848516	1.00[CEU][hapmap]
rs848529	1.00[CEU][hapmap]
rs848543	1.00[CEU][hapmap]
rs882842	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs940293	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36713800-36789600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36720000-36760600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:36725200-36756800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:36727400-36757200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr2:36729600-36790200	Weak transcription	Small Intestine	intestine
6	chr2:36733200-36774200	Weak transcription	Fetal Thymus	thymus
7	chr2:36733400-36764400	Weak transcription	Pancreas	Pancrea
8	chr2:36734600-36756800	Strong transcription	HepG2	liver
9	chr2:36739000-36778200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr2:36739400-36757400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:36744000-36756600	Strong transcription	Muscle Satellite Cultured Cells	--
12	chr2:36744200-36756600	Strong transcription	HSMM	muscle
13	chr2:36744800-36764200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr2:36745000-36756800	Strong transcription	Placenta	Placenta
15	chr2:36745000-36757800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr2:36747800-36766200	Weak transcription	Thymus	Thymus
17	chr2:36747800-36768800	Weak transcription	Colonic Mucosa	Colon
18	chr2:36747800-36774200	Weak transcription	Liver	Liver
19	chr2:36748000-36757400	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr2:36748000-36757400	Weak transcription	Brain Substantia Nigra	brain
21	chr2:36748000-36764400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr2:36748000-36764400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr2:36748200-36757400	Weak transcription	Fetal Heart	heart
24	chr2:36749200-36758000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr2:36749600-36756600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr2:36749600-36764200	Weak transcription	Brain Germinal Matrix	brain
27	chr2:36749600-36765000	Weak transcription	Fetal Brain Male	brain
28	chr2:36749600-36765200	Weak transcription	Right Ventricle	heart
29	chr2:36749800-36764200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr2:36749800-36764200	Weak transcription	Spleen	Spleen
31	chr2:36750000-36765200	Weak transcription	Gastric	stomach
32	chr2:36750600-36757000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr2:36750800-36756400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr2:36750800-36757200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr2:36750800-36757200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr2:36750800-36759000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr2:36750800-36763200	Weak transcription	Fetal Muscle Leg	muscle
38	chr2:36750800-36764400	Weak transcription	Esophagus	oesophagus
39	chr2:36750800-36783200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr2:36751000-36756600	Weak transcription	Brain Hippocampus Middle	brain
41	chr2:36751000-36757000	Weak transcription	Brain Angular Gyrus	brain
42	chr2:36751000-36758000	Weak transcription	Aorta	Aorta
43	chr2:36751000-36759000	Weak transcription	Fetal Kidney	kidney
44	chr2:36751000-36759000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr2:36751000-36761000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr2:36751000-36764200	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr2:36751000-36824200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr2:36751200-36756800	Weak transcription	Brain Anterior Caudate	brain
49	chr2:36751200-36757200	Weak transcription	Primary B cells from peripheral blood	blood
50	chr2:36751200-36757400	Weak transcription	Brain Cingulate Gyrus	brain

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